eSIR: Extended State-Space SIR Models

An implementation of extended state-space SIR models developed by Song Lab at UM school of Public Health. There are several functions available by 1) including a time-varying transmission modifier, 2) adding a time-dependent quarantine compartment, 3) adding a time-dependent antibody-immunization compartment. Wang L. (2020) <doi:10.6339/JDS.202007_18(3).0003>.

Version: 0.4.2
Depends: R (≥ 3.5.2)
Imports: coda (≥ 0.19.3), chron (≥ 2.3.54), data.table (≥ 1.12.0), ggplot2 (≥ 3.2.1), grDevices (≥ 3.5.2), graphics (≥ 3.5.2), gtools (≥ 3.8.1), scales (≥ 1.1.0), stats (≥ 3.5.2), reshape2 (≥ 1.4.3), rjags (≥ 4.10), utils (≥ 3.5.2)
Suggests: testthat (≥ 3.0.0)
Published: 2021-12-10
DOI: 10.32614/CRAN.package.eSIR
Author: Lili Wang [aut], Song Lab [aut] (<>), Paul Egeler [ctb] (Spectrum Health Office of Research and Education), Michael Kleinsasser [cre]
Maintainer: Michael Kleinsasser <biostat-cran-manager at>
License: CC BY 4.0
NeedsCompilation: no
Materials: README
CRAN checks: eSIR results


Reference manual: eSIR.pdf


Package source: eSIR_0.4.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): eSIR_0.4.2.tgz, r-oldrel (arm64): eSIR_0.4.2.tgz, r-release (x86_64): eSIR_0.4.2.tgz, r-oldrel (x86_64): eSIR_0.4.2.tgz
Old sources: eSIR archive


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