TPAC: Tissue-Adjusted Pathway Analysis of Cancer (TPAC)

Contains logic for single sample gene set testing of cancer transcriptomic data with adjustment for normal tissue-specificity. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" <doi:10.1101/2022.03.17.484779>.

Version: 0.2.0
Depends: R (≥ 3.6.0)
Imports: data.table, MASS, TPACData
Published: 2023-10-26
Author: H. Robert Frost [aut, cre]
Maintainer: H. Robert Frost <rob.frost at dartmouth.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: NEWS
CRAN checks: TPAC results

Documentation:

Reference manual: TPAC.pdf
Vignettes: TCGA liver cancer using MSigDB Hallmark collection example

Downloads:

Package source: TPAC_0.2.0.tar.gz
Windows binaries: r-devel: TPAC_0.2.0.zip, r-release: TPAC_0.2.0.zip, r-oldrel: TPAC_0.2.0.zip
macOS binaries: r-release (arm64): TPAC_0.2.0.tgz, r-oldrel (arm64): TPAC_0.2.0.tgz, r-release (x86_64): TPAC_0.2.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=TPAC to link to this page.