CRAN Package Check Results for Package geoR

Last updated on 2018-10-20 18:47:29 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7-5.2.1 21.44 115.17 136.61 NOTE
r-devel-linux-x86_64-debian-gcc 1.7-5.2.1 16.50 90.92 107.42 NOTE
r-devel-linux-x86_64-fedora-clang 1.7-5.2.1 162.59 NOTE
r-devel-linux-x86_64-fedora-gcc 1.7-5.2.1 157.05 NOTE
r-devel-windows-ix86+x86_64 1.7-5.2.1 36.00 186.00 222.00 OK
r-patched-linux-x86_64 1.7-5.2.1 20.02 108.50 128.52 NOTE
r-patched-solaris-x86 1.7-5.2.1 220.10 OK
r-release-linux-x86_64 1.7-5.2.1 21.97 109.43 131.40 NOTE
r-release-windows-ix86+x86_64 1.7-5.2.1 36.00 179.00 215.00 OK
r-release-osx-x86_64 1.7-5.2.1 OK
r-oldrel-windows-ix86+x86_64 1.7-5.2.1 14.00 203.00 217.00 OK
r-oldrel-osx-x86_64 1.7-5.2.1 OK

Additional issues

valgrind

Check Details

Version: 1.7-5.2.1
Check: R code for possible problems
Result: NOTE
    Found the following assignments to the global environment:
    File ‘geoR/R/auxiliar.R’:
     assign(".objfuncQQ", objfunc, pos = 1)
     assign(".bounds.list", .bounds.list, pos = 1)
     assign("madtonormalQQ", madtonormalQQ, pos = 1)
    File ‘geoR/R/likGRF.R’:
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
     temp.list$realisations), vecdist), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
    File ‘geoR/R/profiles.R’:
     assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
     kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
     dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
     fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
     lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
     phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
     sigmasq.est = sigmasq), pos = 1)
     assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
     assign(".temp.list", .temp.temp.list, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
    File ‘geoR/R/simul.R’:
     assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
     nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
     pos = 1)
    File ‘geoR/R/variofit.R’:
     assign(".temp.theta", NULL, pos = 1)
     assign(".temp.theta", theta, pos = 1)
     assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
    File ‘geoR/R/variogram.R’:
     assign(".variog4.nomessage", TRUE, pos = 1)
    
    Found the following calls to attach():
    File ‘geoR/R/auxiliar.R’:
     attach(geodata, pos = 2, warn.conflicts = FALSE)
     attach(geodata$covariate, pos = 3, warn.conflicts = FALSE)
    File ‘geoR/R/geobayes.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    File ‘geoR/R/geodata.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    File ‘geoR/R/kriging.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    See section ‘Good practice’ in ‘?attach’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.7-5.2.1
Check: R code for possible problems
Result: NOTE
    Found the following assignments to the global environment:
    File ‘geoR/R/auxiliar.R’:
     assign(".objfuncQQ", objfunc, pos = 1)
     assign(".bounds.list", .bounds.list, pos = 1)
     assign("madtonormalQQ", madtonormalQQ, pos = 1)
    File ‘geoR/R/likGRF.R’:
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
     temp.list$realisations), vecdist), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
    File ‘geoR/R/profiles.R’:
     assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
     kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
     dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
     fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
     lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
     phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
     sigmasq.est = sigmasq), pos = 1)
     assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
     assign(".temp.list", .temp.temp.list, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
    File ‘geoR/R/simul.R’:
     assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
     nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
     pos = 1)
    File ‘geoR/R/variofit.R’:
     assign(".temp.theta", NULL, pos = 1)
     assign(".temp.theta", theta, pos = 1)
     assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
    File ‘geoR/R/variogram.R’:
     assign(".variog4.nomessage", TRUE, pos = 1)
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.7-5.2.1
Check: compiled code
Result: NOTE
    File ‘geoR/libs/geoR.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc